Archives for February 2019

January 2019 Networking Event Highlights

It was wonderful to welcome so many of our partners, customers and colleagues to our first Networking event of 2019“There is nothing more important than people – that is my team and you, our customers, collaborators and colleagues”, said Bettina Hamelin, Ontario Genomics President and CEO. “We have achieved some incredible things over time and in particular over the past year. Of course we could not have done it without you, so thank you for all your support and collaboration with us!  Your success is our success.” 

To learn more about our impact, please check out our results.  Ontario Genomics is about bringing people together and about collaboration, and we encourage you to join us at our next event on March 6 at the 2019 Canada SynBio conference.

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iGEM and After iGEM: Enabling change-makers through synthetic biology

The International Genetically Engineered Machine (iGEM) Foundation is an independent, non-profit organization dedicated to the advancement of synthetic biology, education and competition, and the development of an open community and collaboration. The iGEM competition provides students around the globe with the opportunity to pursue projects that address unique challenges within their local community within a multidisciplinary environment. Through the competition, iGEM inspires responsible innovation through efforts in biosafety, biosecurity, and public outreach.

This past October, over 6,000 students from 45 countries around the world gathered at the Hynes Convention Centre in Boston for the annual International Genetically Engineered Machines (iGEM) Giant Jamboree. Among the 340 participating international teams, 16 Canadian teams (13 collegiate and 3 high school teams) participated in the competition, showcased their innovative iGEM projects, and excelled at the iGEM Giant Jamboree. Collaborating in multidisciplinary teams, students have designed, built, tested, and measured a system of their own design using interchangeable biological parts and standard molecular biology techniques. These students have worked all summer long, pushing the boundaries of synthetic biology by tackling everyday issues facing the world through innovative projects.

The Canadian iGEM teams worked on a diverse range of projects with positive impacts on the field of synthetic biology and the world. Some projects aimed to find novel solutions to technical problems surrounding core synthetic biology technologies. From investigating mammalian cell-cell interactions to optimizing the FLIP Recombinase system to using optogenetics to regulate the cells and bacteria co-cultures, and then to building protein nano-compartments for the delivery of biological cargo, Canadian iGEM teams are generating innovations that will improve the synthetic biology toolkit. Canadian iGEM teams are also finding solutions to various social and environmental issues, addressing local problems such as aluminum toxicity in lakes and waters, fungal parasites infecting honeybees, plastic waste, fatbergs, and contaminated tailing ponds by using the synthetic biology toolkit to generate unique solutions to tackle these real-world problems. Having identified inefficiencies within industries such as beer-brewing, bioremediation processes, and drug production (cancer drugs and EpiPen), these students have also undertaken initiatives aimed to improve these processes through the use of synthetic biology. Synthetic biology enable teams to create advances in medicine such as a bacterial model to study protein aggregation for Alzheimer’s Disease and biosensors for the detection of glucocorticoid hormones. These various iGEM projects demonstrate the impact that iGEM has on the development of synthetic biology. By engaging students in synthetic biology research, we hope to build a better world by solving problems with this technology, inspiring responsible innovation, and setting standards such as our open source standardized genetic parts. These novel and impactful projects reflect the strong interest that students have in synthetic biology across Canada and the potential of their projects to solve real-world problems. These projects from 2018 are just a few examples of the inspiring projects that Canadian iGEM teams. There are many more iGEM projects that Canadian iGEMers have undertaken over the years.

Since its inception in 2004, over 30,000 iGEMers have gone through the competition. In Canada alone, there are hundreds of iGEMers that have participated in the competition. This global network of trailblazers is leading the field of synthetic biology. As the community continues to grow, the iGEM Foundation is working to support the international community of iGEMers in continuing and expanding their impact on the world beyond the competition with the launch of the global After iGEM Program. To support students in sharing their research with the rest of the academic community, After iGEM and Ontario Genomics have collaborated to organize a poster showcase during the 2019 Canada SynBio conference. To facilitate the networking and exchange of ideas between synthetic biology enthusiasts and iGEMers, After iGEM will be hosting a reception on Mar 5th, 2019 in Toronto Ontario. To register, please click here. iGEM and After iGEM are excited to bring

As the 2019 iGEM season progresses, we are excited to see the innovation and impact that iGEM teams in Canada will bring! We also look forward to connecting and working with more synthetic biology enthusiasts in the community to propel the advancement of synthetic biology in Canada.

Revealing Hidden Mysteries with Ancient DNA

Lakehead University’s Paleo-DNA Laboratory was born out of necessity. Back in 1996, there were no laboratories that performed DNA analysis on archaeological samples (paleo or ancient DNA) on a fee for service basis. Anthropology professor Dr. El Molto, who had acquired vast amounts of human material from his site in the Dahkleh Oasis, Egypt, had nowhere to bring his samples for analysis to examine the relationships between the individuals he was unearthing. So, he decided to establish his own laboratory at the Lakehead University-Thunder Bay campus and fill this unique void to the anthropology community. He acquired some second-hand equipment, extra lab space, and sent some students to train with the Armed Forces DNA Identification Laboratory (AFDIL) in the United States. The focus of the training was on mitochondrial DNA, the type of DNA most commonly associated with archaeological or degraded remains.

The Paleo-DNA Laboratory became one of the first Canadian laboratories to develop mitochondrial DNA analysis techniques. Mitochondrial DNA analysis clearly holds numerous benefits over other techniques, notably in cases where DNA is so degraded that other techniques simply will not produce any results. This singular achievement by the Paleo-DNA Laboratory put Thunder Bay on the world map of ancient DNA analyses. Soon after, enough interest was generated that the lab began offering training programs in ancient DNA analysis. To date, this training program has hosted many international students from England, Australia, France, the United Arab Emirates, Nigeria, and the United States.

One of the first publicized projects the laboratory worked on had to do with the identification of a body found floating after the Titanic disaster. The body was that of a small child and was recovered by the men of the Mackay-Bennett, a Canadian recovery ship. Since the body was never claimed, it was laid to rest in Halifax’s Fairview Lawn Cemetery. Over time, the ground water surrounding the grave eroded most of the remains except for a small fragment of bone. The Paleo-DNA Laboratory was part of an extensive team of researchers, including genealogists, who identified the child using mitochondrial DNA (mtDNA). Mitochondrial DNA is a maternally inherited DNA that is passed down through the maternal lineage from mother to children. It is the most likely type of DNA that remains in an old, degraded sample. The mtDNA of the child was compared to the mtDNA of possible living maternal (female lineage) relatives for identification. The unknown child was identified as Sidney Leslie Goodwin, a 19 month old English boy. See more here.

The Lakehead University lab was also involved in one of the first identifications of a World War I soldier whose body was discovered during construction of a gas pipeline south of Avion, France in 2003. In this case, there were no living maternal relatives that could be tested so another type of DNA would be used that focussed on the paternal lineage. The Y-chromosome is only present in male individuals and is paternally inherited genetic information that is passed on from father to son. Using degraded DNA recovery techniques and Y-chromosome analysis, the genetic profile of the soldier was compared to possible living paternal (male lineage) relatives for identification. The soldier was identified as Private Herbert Peterson from Alberta.

The Paleo-DNA Laboratory does not just focus on human DNA. Sometime after Hurricane Katrina decimated New Orleans in 2005, a lampshade was purchased at a yard sale. The vendor claimed the lampshade was ‘made from the skin of Jews’. Artifacts made from human material are known to have been fashioned during the Holocaust from places such as Buchenwald concentration camp. Upon purchasing this particular lamp, it was taken to a lab in the United States for DNA testing to determine whether it was in fact made of human skin or not. The results of that testing revealed the presence of human DNA. Fast forward many years later, the Paleo-DNA Laboratory was called upon to use their well-crafted skills of degraded DNA testing to perform further genetic analysis on the lampshade to determine sex identification and deep ancestry. As it turned out, none of that information could be resolved since in the end, the lampshade was determined to be made of cow skin and not human skin as initially concluded. Human contamination plays a significant role in DNA analysis and in this case knowing how to control and overcome it is what led to an unexpected conclusion.

Helping find genetic clues to solving ancient mysteries has become the laboratory’s forte. The Paleo-DNA Laboratory takes an ancient or degraded sample, works their magic, and recovers DNA where other laboratories fail. Besides their ancient DNA testing, they offer a range of other services such as paternity and relationship testing, unknown sample identification, and custom DNA analysis training and consultation. For more information on Lakehead University’s Paleo-DNA Laboratory visit the website at www.ancientdna.com or contact paleodna@lakeheadu.ca .

Start-up pitch competition finalists

Take a sneak peek at the six (6) SynBio start-ups selected to pitch for cash prizes at the 2nd Annual Canada SynBio conference on March 6, 2019.

 

 

Creative Protein Solutions Inc.
Novel handheld and mobile app diagnostics device to provide much-needed veterinary point-of-care solutions.
FREDsense Technologies Corp.
Portable field kits providing affordable, rapid, on-site industrial water testing for water source optimization.
Genecis Bioindustries Inc.
Converting organic waste into high-value biodegradable materials to provide more affordable premium products.
Mediphage Bioceuticals, Inc
Naturalized DNA biologics to provide the safest, effective and most affordable gene therapy.
Spindle Biotech Inc.
Benchtop DNA Printer delivering high purity synthetic DNA in a day instead of weeks.
TATUM Bioscience
Engineering live biotherapeutics to tackle antibiotic resistance.

Collaborative genomics investments for a healthier Ontario

February 4, 2019, Guelph, Ontario – Genomics research is producing dramatic breakthroughs in science, transforming our understanding of the world around us. The results of this research are being used to address important challenges and develop innovative solutions, not just in human health, but across diverse sectors of the economy.

Today, the Honourable Kirsty Duncan, Minister of Science and Sport, announced $22.7 million funding to support 37 research projects as a result of three Genome Canada funding competitions.  

Sixteen of these projects are based in Ontario – driving $10.9 million of federal funding into the province, and an additional $19 million in investments by industry, the Ontario government and other funding partners, for a total of $29.9 million to support the development and application of genomics innovations in Ontario.

This investment will support researchers at the University of Guelph including Dr. Bonnie Mallard, who is working in collaboration with Semex Alliance – a Canadian company started and owned by Canadian farmers – on improving cattle welfare by fighting Bovine Respiratory Disease, which costs Canadian farmers more than $100 million a year. Funding will also support a collaborative project between Dr. Mehrdad Hajibabaei and his team with researchers from the World Wildlife Fund (WWF) and Environment and Climate Change Canada.  They will use ‘environmental DNA barcoding’ to generate and monitor biodiversity of Canada’s watersheds to better understand the impacts of resource projects like mines, hydro dams and energy projects.

These collaborative investments advance genomics-based solutions that improve health, create jobs and drive economic growth for all Ontarians.

Quotes

“Through these collaborative investments, we are enabling the development of real-world genomics-based solutions that will positively impact the health and well-being of Ontarians, protect our environment, and grow our economy.”
– Dr. Bettina Hamelin, President and CEO, Ontario Genomics  

Quick facts

Ontario Genomics
Donna Takacs
Director, Communications
dtakacs@ontariogenomics.ca
Cell: 416-275-4180

Genome Canada
Rachael Maxwell
Manager, Public Affairs and Communications
rmaxwell@genomecanada.ca
Cell: 514-589-3784

Twitter: @CDNScience; @OntarioGenomics; @GenomeCanada

Ontario Genomics is a not-for-profit organization funded by the Ontario government and Genome Canada.  Established in 2000, it is focused on stimulating, enabling, nurturing and applying genomics innovations in the province of Ontario across all sectors of the bio-economy.  Ontario Genomics connects ideas, people and organizations to invest in genomics-based solutions aimed at improving quality of life and driving economic growth.

Genome Canada is a not-for-profit organization that acts as a catalyst for developing and applying genomics and genomic-based technologies, to create economic and social benefits for Canadians. Genome Canada connects ideas and people across public and private sectors to find new uses for genomics, invests in large-scale science and technology to fuel innovation, and translates discoveries into applications and solutions across key sectors of national importance, including health, agriculture, forestry, fisheries & aquaculture, energy, mining, and the environment.