Archives for November 2017

Canada and China partnering to develop diagnostics tests for preterm birth

BGI and Lunenfeld-Tanenbaum Research Institute, part of Sinai Health System, awarded investment from Genome Canada and Ontario Genomics

BGI and Lunenfeld-Tanenbaum Research Institute awarded investment from Genome Canada and Ontario Genomics

PRESS RELEASE – Shenzhen, China and Toronto, Canada, November 30, 2017 ‒ BGI and the Lunenfeld-Tanenbaum Research Institute, part of Sinai Health System, today announced the signing of a Memorandum of Understanding (MOU) outlining their intention to collaborate on the development a genomics-based diagnostic test for the early identification of women at risk for pre-term birth and other pregnancy complications. The non-invasive test will be based on genomic information from easy to obtain blood samples.

Preterm birth complications are the leading cause of death among children under 5 years of age. Of the 200 million women worldwide who become pregnant annually, 15 million will deliver preterm, and this number is rising. Each year, 1 million preterm babies die and millions more will experience serious, life-long medical and developmental disorders as a result. In Canada alone, the annual costs associated with preterm births are estimated to be $600 million.

BGI, one of the largest genomic organizations in the world, is committed to reducing the rate of major disease by offering accurate and affordable genetic tests and molecular diagnostics services. Dr. Stephen Lye, Senior Investigator at the Toronto-based Lunenfeld-Tanenbaum Research Institute and research lead on this project, has identified gene expression signatures in maternal white blood cells that can predict which women who experience too-early symptoms of labor, will go on to experience preterm birth of their infants.

The first phase of this international partnership was recently awarded a $4.6 CAD million Genomic Applications Partnership Program (GAPP) investment from Genome Canada and Ontario Genomics. It will focus on enhancing the diagnostic potential of these gene expression signatures with the goal of developing a simple genomic test to identify women in threatened preterm labour who will deliver preterm. Approximately 2 million women are hospitalized annually in North America for Threatened Pre-Term Labour. However, less than 20% of these women will deliver preterm, exposing 80% to unnecessary interventions and hospitalization.  The second phase of this collaboration will focus on developing a screening test early in pregnancy to identify women at risk of a preterm birth with the potential of saving the Canadian healthcare system $200 CAD million per year, and of reducing the burden on neonatal ICUs.

BGI intends to continue its research collaboration with the Lunenfeld-Tanenbaum Research Institute and expand its R&D and business activities in Canada, which will generate downstream investment and create jobs for highly qualified personnel.  As part of the collaboration, BGI will provide its BGISEQ-500Ô next generation sequencing system and will eventually expand the sequencing capacity with its newly introduced MGISEQ-2000Ô sequencing system. This will accommodate future joint research and Laboratory Developed Test (LDT) projects.


Quotes

“This collaboration promises to be a major step forward for the health of women and children worldwide.  Agreements like this one show how much we can accomplish when we connect Ontario’s innovative researchers with leading global partners through international business missions to share ideas that can make a real impact in people’s lives,” said Kathleen Wynne, Premier of Ontario.

“We are pleased to support this international collaboration that will deliver multiple benefits for Canada, China and beyond – chief among them, helping to improve maternal and newborn health worldwide through a simple genomic test,”  said Marc LePage, President and CEO, Genome Canada.

“Through this collaborative investment, we are enabling the development of diagnostics that will have a positive global impact on the personal, social and economic burden associated with preterm births,” said Bettina Hamelin, President and CEO, Ontario Genomics.

Ning Li, Chief Development Officer at BGI said in a statement that “The results from the joint venture with Lunenfeld-Tanenbaum Research Institute will produce an important addition to our existing reproductive testing portfolio and contribute to the reduction of birth defects, improvement in maternal health in Canada, China and around the world”.

“This investment has the potential to transform prenatal care for women at risk of pre-term birth. I am very grateful for this investment, and for this important collaboration with partners who are equally committed to providing exceptional care for this patient population,” says Dr. Stephen Lye, Senior Investigator, Lunenfeld-Tanenbaum Research Institute.


About Lunenfeld-Tanenbaum Research Institute
The Lunenfeld-Tanenbaum Research Institute, part of Sinai Health System, is a leading biomedical research centre, ranking amongst the top biomedical research institutes in the world. Established in 1985, the institute is profoundly advancing understanding of human biology in health and disease. Many of the breakthroughs that began as fundamental research have resulted in new and better ways to prevent, diagnose and treat prevalent conditions. The institute is affiliated with the University of Toronto and is focused on women\’s and infants\’ health, cancer biology, stem cell biology and regenerative medicine, neurobiology, diabetes, arthritis, health systems research, population health services and solutions, and systems biology. www.lunenfeld.ca.

About BGI
BGI Group was established in 1999 with participation in the original Human Genome Project. Since then, BGI Group has grown in to one of the world’s largest genomics organizations, experienced in genomic research, commercial NGS services and sequencer manufacturing. One of the company objectives is reducing the rate of birth defects and maternal health by offering accurate and affordable genetic tests. www.bgi.com

About Genome Canada
Genome Canada is a not-for-profit organization that aims to harness the transformative power of genomics for the benefit of all Canadians. We connect ideas and people across public and private sectors to find new uses for genomics, invest in large-scale science and technology to fuel innovation, and translate discoveries into solutions across key sectors of national importance, including health, agriculture, forestry, fisheries & aquaculture, energy, mining, and the environment. www.genomecanada.ca.

About Ontario Genomics
Ontario Genomics is a not-for-profit organization funded by the Ontario government and the federal research funding agency, Genome Canada.  Established in 2000, it is the only entity focused solely on stimulating, enabling and nurturing genomics innovation in the province of Ontario across all sectors of the bio-economy.  Ontario Genomics connects ideas, people and organizations to invest in genomics-based solutions aimed at improving quality of life and driving economic growth. www.OntarioGenomics.ca.

Ontario Genomics invests in antibody protein sequencing company Rapid Novor

Ontario Genomics has closed an investment in Rapid Novor, a Kitchener-Waterloo based biotech company that provides rapid, accurate, de novo protein sequencing services across Canada and internationally. This was another investment from the 2017 round of the Pre-commercial Business Development Fund (PBDF), which supports commercially promising ‘omics technologies.

To date, Rapid Novor has offered monoclonal antibody protein sequencing to biopharmaceutical companies and academic labs where antibody development is key to their research, e.g. immunotherapy development. The $100,000 investment from Ontario Genomics will support expansion of this proteomic and bioinformatics-based technology to enable sequencing of polyclonal antibody proteins.

Polyclonal antibody sequencing services are not readily available, so the development of this technology will address an unmet need for many R&D groups. Dr. Bin Ma, President and Co-founder of Rapid Novor commented: “Our existing clients are already asking us to sequence polyclonal antibodies, so this funding from Ontario Genomics will enable us to meet this demand. Our aim is to be the first to develop a validated polyclonal antibody protein sequencing technology for our clients. This will ultimately expand our service offerings, increase our competitiveness and allow us to grow our Ontario-based company.”

The primary aim of this Ontario Genomics investment program is to support the development of ‘omics technologies towards commercial applications, to speed up the path from R&D to market, thereby driving economic value. “Through this investment, Ontario Genomics is enabling the development and commercialization of an omics-based technology that is prone to fill a gap in current antibody sequencing offerings in Canada and beyond,” commented Dr. Bettina Hamelin, CEO of Ontario Genomics.

Ontario Genomics and University of Guelph advance dialogue on the regulation of innovation in Canada’s agri-food sector

On November 1st, Ontario Genomics in partnership with the University of Guelph hosted a panel discussion at the Canadian Science Policy Conference in Ottawa addressing regulatory policy for agri-food technologies in an era of accelerating innovation. With Ontario Genomics finalizing its Genomics Strategy for Agriculture and Agri-Food, this discussion was particularly timely.

All panelists highlighted the agriculture sector as one of the most exciting areas for economic growth and innovation in Canada, referencing the Barton Report’s recognition of this fact. In particular, genomics and data analytics are identified within that report as key technology drivers that will enable this expected growth. However, the importance of public opinion and regulatory aspects of bringing such technologies to market cannot be underestimated. As panelist Dr. Evan Fraser of the Arrell Food Institute at the University of Guelph succinctly stated, “We must work in the social context for any technology”.  The panel, with representation from academia, industry, government and the public explored this topic by examining where we have been, where we are, and where we are going.

Dr. Malcom Campbell, VP of Research at the University of Guelph and panel moderator, in his opening remarks painted the picture of farming 50 years ago as pastoral, with a much larger percentage of the population engaged in family farming. This is a critical point as in those days people had a much closer connection to, and a better understanding of, where their food came from.

Fast forwarding to where we are today – agriculture has changed dramatically. It is increasingly industrialized ‘advanced manufacturing’ of food with use of technology, from digital and autonomous vehicles to genomic and molecular technologies. As Evan Fraser put it, the nature of agriculture work has changed with significant impacts on productivity, but also on rural communities. And, as Dr. Tyler Whale, President of Ontario Agri-Food Technologies, stated we are farming using only 1% of the data available to us, so this is just the beginning.

Panelist Dr. Michael Lohuis, VP of Research and Innovation at Semex, described the industry today consisting of companies that developed and adopted innovation, while those that failed to uptake innovations like genomic sequencing no longer in business.  At the same time, new innovations like gene editing, that can be used to speed up traditional breeding for traits like decreased methane emissions, face regulatory uncertainty, making investment a risky decision. If this isn’t remedied, Canadian companies could be outcompeted in the global marketplace.

Contrasted with increasing technological innovation, Crystal Mackay, President of the Canadian Centre for Food Integrity, described a society with an increasing urban-rural divide with the consequence that we understand current food production systems very poorly. This makes grasping change even more difficult, as there is no benchmark from which to stand on. This, combined with a lack of investment in public engagement to match research investment, has contributed to public resistance to technologies like GMO.

So where are we going? A few key themes emerged from this panel discussion, including one resounding theme: the need for partnerships to advance this issue. Dr. Pierre Bilodeau, Exec. Director at the Canadian Food Inspection Agency (CFIA), emphasized the regulators’ need for collaboration to improve their ability to use science to inform regulations. Critically, he called for technology developers to engage CFIA early as part of their strategy to help educate and prepare them for innovative new technologies. Dr. Cornelia Kreplin, Executive Director, Sustainable Production and Food Innovation at Alberta Innovates, emphasized the need for collaboration among organizations and to align our competitive advantages, not compete with each other, for the success of Canadian agriculture.

One key partner that was emphasized by all panelists was the public. Crystal Mackay stated the need to give trusted people like scientists and farmers the resources needed for a broader reach with the public in an era of social media and talking points. Likewise, companies recognize the same need for their success. Michael Lohuis referenced author Peter Sandman and the need to understand the factors that help turn risk into public outrage at technologies like GMO and to rebuild that trust by inviting them to not “…trust me, but track me”.

Dr. Bettina Hamelin, President and CEO of Ontario Genomics, ended the lively Q&A session by asking the panel how we can turn words into action and create the partnerships needed for success. With such a large, diverse sector with complex issues of regulatory and public trust, this is not a simple task. But with the importance of agriculture to our economic prosperity, environmental sustainability and our health it is a question that we’re working hard to answer.

The co-organizers of the discussion would like to thank all panelists for their contributions to the conversation, and look forward to future discourse on this critical topic.

 

Co-Organizers
Ihor Boszko, VP of Business Development, Ontario Genomics
Mario Thomas, CEO, Biodiversity Institute of Ontario

Panelists
Malcom Campbell-VP of Research, University of Guelph (Moderator)
Pierre Bilodeau-Executive Director, Science Branch, Canadian Food Inspection Agency
Evan Fraser-Director, Arrell Food Institute, University of Guelph
Cornelia Kreplin-Executive Director, Bio Sector, Alberta Innovates Bio Solutions
Michael Lohuis-Vice-President, Research & Development, Semex Alliance
Crystal Mackay-President, Canadian Centre for Food Integrity
Tyler Whale-President, Ontario Agri-Food Technologies

Ontario Genomics invests in renewable chemicals

Ontario Genomics is pleased to announce its investment in Ardra Inc. via its Pre-Commercial Business Development Fund. Ardra is a specialty chemicals company focused on the production of natural ingredients for the cosmetics and flavour and fragrance industries. Their synthetic biology platform uses designer biochemical pathways to produce a large portfolio of high-value products.

Ardra’s development pipeline has two ingredients: 1) natural butylene glycol used in cosmetics, and 2) green leaf volatiles used in flavours and fragrances. The $100,000 investment from Ontario Genomics will advance the development of natural leaf aldehyde, a green leaf volatile used in green apple flavour, and as a scent in perfumery. The CEO Dr. Pratish Gawand commented: “We are thrilled to receive the funding from Ontario Genomics. It de-risks and supports the commercialization of Ardra’s process for natural leaf-aldehyde. The funding will help us establish a working process for the flavour ingredient as we continue to further develop our product pipeline.”

The cosmetics and flavour and fragrances industries are dominated by petrochemical-derived ingredients, as natural ingredients have fluctuating and high prices along with seasonal variations. Ardra’s processes use renewable feedstock such as agricultural or forestry biomass, and engineered microbes to allow for low cost production and a steady supply of natural ingredients at a constant price.  “Ontario Genomics is pleased to support the translation of innovative Canadian research into a practical solution that fills a market need,” said the CEO of Ontario Genomics, Dr. Bettina Hamelin.

Ardra is a Canadian start-up spun out of BioZone at the University of Toronto’s Department of Chemical Engineering. The CEO, Dr. Pratish Gawand and the CSO, Dr. Jonas Müller were both post-doctoral fellows in the laboratory of Prof. R. Mahadevan. Their technology builds on work done in the BEEM project that was previously funded by Genome Canada.