Archives for August 2015

First ever use of pharmacogenomics in primary care

Challenge:

Mental illnesses are the result of a complex interaction between genetic and environmental factors. The recovery of people experiencing mental illness is a critical consideration for the Canadian healthcare system:

  • During lifetime about 20% of Canadians will experience some type of mental illness
  • Major depression (8%) and anxiety disorder (12%) are the most prevalent
  • At any time approx 10.4% of Canadians are suffering from acute or chronic mental illness
  • 79% of all short term disabilities and 82% of long term disabilities are related to mental illness, costing Canada $20.7 billion in 2012. (Conference Board of Canada estimate, July 2012).

However, many prescribed drugs are only effective about half the time, so finding the right medication is often the result of an ineffective trial and error approach, exposing patients to the risk of serious side effects and sustained suffering.

Genetic testing identifies patients who will not respond to specific medications or will experience side effects, thereby helping physicians prescribe the most appropriate drugs to each patient: maximizing the health benefits and decreasing the risk of side effects.

Genomics solution

Assurex Health is partnering with scientists at Toronto’s Centre for Addiction and Mental Health (CAMH) to develop the Enhanced GeneSight genomic test to better match patients with mental illness to antidepressant and antipsychotic medication based on their genes.

This project, funded through Genome Canada\’s GAPP program, will deliver genetic testing in the primary care setting to determine the best medication for each patient based on their unique genetic profile. Patients are asked for a sample of saliva or a cheek swab, from which DNA is extracted. This DNA is tested for a number of genes that control how drugs are metabolized, how drugs interact with their targets in the body and their side effects. A report is delivered to the patient’s physician within a day or two. This report, using Assurex Health’s GeneSight panel, helps guide the physician as to which of antidepressant or antipsychotic drugs are best suited to that patient – enabling them to thereby avoid ineffective medication and reduce unnecessary side effects.

The GAPP project will validate new genomic markers that scientists at CAMH have identified for their ability to predict efficacy and side effects of psychiatric medications, including those that predict which individuals are likely to experience weight gain after taking anti-psychotic medications. The most predictive markers will be integrated into E-GeneSight. This is anticipated to reduce the need for “trial-and-error” approaches to prescribing and increase the likelihood that people will respond optimally to the medications prescribed for them, while reducing side effects.

Impact

Giving patients the right medication earlier can reduce the burden of mental illness for patients and their families, decrease the risk of detrimental side effects, and improve the quality of life of those affected by mental illness. Furthermore, reducing ineffective treatments will save the health care system money: decreasing physician visits, and reducing rates and length of hospitalization. Patients who recover faster need fewer healthcare dollars, are able to return to work (contributing to the tax base) sooner, and assume their role in their family and community.

Collaborators

Assurex Health, a global leader in personalized medicine, has signed an agreement for a joint venture with the Centre for Addiction and Mental Health (CAMH).  AssureRx Canada has been established as a subsidiary of the U.S. company, and will have an office and laboratory at CAMH.

 

Read the project description.

Three OG seeded companies get additional funding

InDanio Bioscience, Encycle Therapeautics made new research partnerships for research and drug development and RNA Diagnostics received angel investment.

Two SMEs, InDanio Bioscience and Encycle Therapeautics will partner with Toronto researchers and provide in-kind contributions to the $1.5M funding by CQDM and CIHR, through its institutes of Cancer Research, Genetics and Infection and Immunity medicine, for two translational projects in personalized medicine to accelerate drug discovery and drug development. In addition, RNA Diagnostics, a Sudbury-based medical diagnostic company, has successfully closed an additional round of angel investment with support of the NORCAT Innovation Mill Angel group. The Ontario Genomics Institute\’s Pre-commercialization Business Development Fund (PBDF) funded RNA Diagnostics in 2012, InDanio Bioscience in 2010.

More Canadians to benefit from personalized cancer treatment

Personalized cancer treatment requires complex clinical laboratory testing to determine a tumour’s genetic profile. The Princess Margaret Cancer Centre, a leader in providing this testing for its patients, and LifeLabs Medical Laboratory Services have begun working together to expand this testing capacity to more Canadians.

The Princess Margaret Cancer Centre (PMCC) has teamed up with Ontario-based LifeLabs Medical Laboratory Services (LifeLabs) to expand the availability of cancer genome profiling across Canada, with funding from Genome Canada. This will improve access to personalized cancer treatment for patients across the country.

Cancer genome profiling is emerging as an essential step in modern cancer care. The percentage of patients whose tumours were driven by genetic mutations that could be targets for tailored cancer therapeutics range from 21% (head and neck tumours) up to 73% (melanoma), according to a Personalized Medicine Coalition report. In fact, tumour classification is changing from being based on the tissue of origin to being based on the underlying genomic alterations, making it critical that patients across the country have equal and timely access to appropriate testing. And as discussed in an accompanying article “Can personalized cancer care be cost-effective?” this type of testing can lead to better outcomes as well as save healthcare dollars.

Major treatment centres such as the PMCC have been at the forefront of developing and applying new tumour genetic profiling tests for their patients. However, access to these tests outside such major cancer centres is difficult due to the complexity of the tests.

For this project, Dr. Suzanne Kamel-Reid at the PMCC and team will combine their expertise in next-generation sequencing for clinical tumour profiling with LifeLabs’ expertise in specimen collection, their transportation network and logistics capabilities. They will also develop a secure cloud-based cancer genome analysis infrastructure to be able to store and share information between the two groups. The combined expertise and resources will expand the availability of such tests across Canada including rural areas and community hospitals.

By: Kathryn Deuchars, Director, Ontario Personalized Medicine Network

Rising prices for new targeted therapeutics threatens their own success

One cancer drug alone could wipe out Canada’s total budget of $12B for prescription drugs. Can this last?

Drug companies bringing out new targeted therapies for rare disorders are asking, and getting, eye-popping prices. Examples include Kalydeco® for one type of Cystic Fibrosis, reported to cost CAD$300,000 per year, or the recently marketed Solaris® for which Alexion tried to get CAD$700,000 per year for Canadian patients (even higher than it was charging U.S. patients). Drug companies argue that these costs are justified because the drugs are showing dramatic results for patients. But because these are for a very small number of patients, and only a few have been marketed so far, our healthcare system may be able to absorb the cost – there are only 90 patients in Canada that might benefit from Solaris, for example. But this won’t always be the case – there are 7,000 rare disorders that may be amenable to drug treatment, and treatments are typically needed life-long.

What really brings it home are the escalating prices for some new targeted therapies for cancer.

Prominent oncologist Dr. Leornard Saltz of the Memorial Sloan Kettering Cancer Center took aim at these at the recent American Society of Clinical Oncology (ASCO) meeting. At the plenary speech, Dr. Saltz focused on the expected high cost of new combination treatment for metastatic melanoma from Bristol-Myers Squibb Co. Although he welcomed the arrival of a “truly, truly remarkable” new therapy, “he said that combining the drugs would cost around $295,000 a patient over nearly one year, which he called unsustainable. If all U.S. patients with metastatic cancer took drugs priced at $295,000 a year, it would cost $174 billion to treat them all for just one year” reports the Wall Street Journal.

Given that Canada’s total public spend on prescription drugs is about $12B, and adjusting for Canada’s population size, that would pretty much wipe out Canada’s total budget for prescription drugs.

Not all new drug pricing seems so far out of line. Although the recently released Hepatitis C drug Harvoni® costs over $1,000 per pill, and a complete course of treatment costs approximately CAD$85,000, this is a one-time treatment with near 100% cure rate for a potentially lethal disease with a very high cost burden (see our July 2015 article about this new treatment). And as outlined in an accompanying article, “Can personalized cancer care be cost-effective?” selecting the best targeted treatment for a patient’s cancer by genetic analysis of their tumour has been shown to be both cost effective and to give better outcomes.

The focus needs to be on how to appropriately price new drugs. The CBC looked into the Solaris story, pointing out that the cost of such drugs has little to do with the development and manufacturing costs. The CBC article also pointed out that much of the basic discovery costs came out of the public purse in the form of academic research funding, which drug companies do not factor into their pricing. Barry Werth of the MIT Technology Review looked into the high prices for two new drugs, Kalydeco® and Zaltrap®, and cites veteran drug maker and former Genzyme CEO Henri Termeer as saying “In determining the price for a drug, companies ask themselves questions that have next to nothing to do with the drugs’ costs. It is not a science […] It is a feel.”

Two efforts underway in Canada should help realign drug pricing. Ontario’s MaRS EXCITE program helps companies develop the evidentiary bundle, including an economic analysis, that a company can bring to the bargaining table to provide a more rational approach to drug pricing. The project “PACE-‘Omics,” led by Alberta’s Drs. Christopher McCabe and Tania Bubela, funded by Genome Canada, aims to develop better decision-making tools “to give policymakers and investors the tools they need to make the right investment decisions on technology development, regulatory pathways, cost-effectiveness and benefit to the Canadian healthcare system.” Together these approaches should help bring a better informed approach to establishing sustainable prices for new drugs.

By: Kathryn Deuchars, Director, Ontario Personalized Medicine Network

Can personalized cancer care be cost-effective?

A study of personalized cancer care in action found that this approach not only saved money but resulted in better outcomes. Such personalized cancer treatment is available here in Ontario.

A small study by Intermountain Healthcare, in Salt Lake City, compared the costs of using personalized medicine in cancer patients with late stage, metastatic disease. Patients whose therapy selection was based on next-generation tumour profiling testing rather than using standard chemotherapy options have lower costs per week and longer progression-free survival.

Personalized approaches to cancer treatment are being tested at many centers, including Ontario’s Princess Margaret Cancer Centre, which launched the “IMPACT” trial (for “Integrated Molecular Profiling in Advanced Cancer Trial”) in March, 2012. This trial is described as “the first Canadian comprehensive molecular profiling program that seeks to provide doctors with specific cancer gene information so that each patient’s treatment can be tailored to his/her specific form of the disease” and aims to test 1,000 patients.

Intermountain Healthcare has been offering a similar type of test, a 98-gene cancer panel test for genes commonly altered in solid tumours. The test involves sequencing over 1200 regions of these 98 genes. The results can be used to identify the appropriate targeted therapeutic specific to the genetic profile of a patient’s tumour. In a retrospective matched cohort study of 72 patients with metastatic cancer, patients at Intermountain Healthcare that received the gene panel test had an average progression-free survival of 22.9 weeks compared to 12 weeks for the group that received standard chemotherapy treatment. The respective costs per week were slightly lower in the gene panel group, at US$3,204 vs. US$3,501. The $6,000 price of the test was included in the cost analysis.

The key contributors to the costs in chemotherapy arm “were more and longer hospital stays and emergency room visits.” In addition to avoiding such hospital visits, “targeted therapies offer other benefits. Many of the targeted drugs are oral agents, which allow patients to take them at home or work, while continuing to be productive at work and go about their daily life. They don\’t have to take time off work to go into the hospital for chemotherapy treatment” according to the authors of the study. These ancillary benefits were not factored into the above cost analysis, suggesting that the overall cost benefit is even higher.

Full details of the Intermountain Healthcare study are yet to be released (the work was presented in abstract form in conjunction with the recent annual meeting of the American Society of Clinical Oncology). Yet they suggest that the promise of personalized medicine of reducing costs while improving care can be realized. A key influencer of this, however, will be the cost of targeted therapeutics. As discussed in the accompanying article “Rising prices for new targeted therapeutics threatens their own success” new approaches are needed to ensure that high costs don’t derail the potential of personalized medicine.

By: Kathryn Deuchars, Director, Ontario Personalized Medicine Network

2015 Large Scale Applied Research Project Competition(LSARP) Natural Resource and the Environment

Genome Canada has launched a Request for Applications (RFA) and is seeking proposals for large-scale research projects which focus on the application of genomics to Natural Resources and the Environment.

This competition aims to support applied research projects focused on using genomic approaches to address challenges and opportunities of importance to Canada’s natural resources and environment sectors, including interactions between natural resources and the environment, thereby contributing to the Canadian bioeconomy and the well-being of Canadians. The scope of this funding opportunity includes areas such as genomics research related to energy, mining, forestry, water stewardship, wildlife management/conservation and bioproducts that help conserve natural resources and protect the environment. It also includes the use of genomics to identify key elements that impact ecosystem structure, function and diversity.

Applicants must demonstrate how their proposal holds high potential for attaining concrete deliverables by the end of the funding period, and that these deliverables will be subsequently translated into significant social and/or economic benefits within as short a timeframe as possible following the conclusion of the project, taking into consideration what is reasonable for each sector.

Note that studies focusing on human health as impacted by the environment or projects focused on producing food or food supplements for human or animal consumption are not eligible for support in this competition.

All applicants must identify and address key ethical, economic, environmental, legal and/or social aspects relevant to the genomics research (GE3LS) being proposed as part of the overall research plan. Stand alone GE3LS proposals are also eligible to be submitted as large-scale projects.

In order to better prepare the projects being submitted from Ontario for this competition, the Ontario Genomics Institute (OGI) will complete a due diligence review of applications prior to submission to Genome Canada. Please note that to accommodate this process the OGI deadlines differ from those in the official RFA from Genome Canada. Applicants will receive feedback on their applications including gaps and areas for improvement. OGI plans to use this feedback to assess the level and type of support required to help the teams through the application process.

Researchers in Ontario intending to submit an application are strongly encouraged to contact OGI to discuss details of the competition such as the scope, the application process, tips for writing the Benefits to Canada Section of the proposal, how to incorporate GE3LS in proposals, and co-funding requirements.

Genome Canada’s Disruptive Innovations in Genomics (DIG)

On June 11, 2015 Genome Canada launched a Request for Applications (RFA) seeking proposals for research projects which focus on Disruptive Innovations in Genomics.

For the purposes of this competition, a Disruptive Innovation must be either a new genomics technology or the application of an existing technology from another field, applied to the field of genomics. The Innovation must be truly transformative in that it has the potential to either displace an existing technology, disrupt an existing market or create a new market. A Disruptive Innovation offers the capability to do things not previously possible and is not an incremental improvement of an existing technology.

This competition aims to support projects focused on early-stage feasibility studies (Phase 1 projects) and prototype development (Phase 2 projects). Phase 1 and Phase 2 will be run in parallel and a second round of Phase 2 funding, open only to eligible Phase 1 projects, will be available 18 months after successful Phase 1 projects are launched. This will allow Phase 1 projects approved for Phase 2 funding to continue to Phase 2 without a gap in funding, and for projects not approved for Phase 2 funding to wind down.

All applicants must demonstrate, with supporting evidence, the potential for the innovation to be disruptive, have impact within the technology space, and eventually benefits to Canada. In addition, Phase 2 projects must have clear deliverables that will be realized by the end of the project and a plan which explains the next steps of how the deliverables from the research will be transferred, disseminated, used, and/or applied to realize the benefits.

In order to better prepare Ontario-led projects for this competition, OGI will do an initial eligibility assessment of registrations and will coordinate an external review of eligible applications prior to submission to Genome Canada. Please note that to accommodate this process the deadlines for submission to OGI differ from those in the official RFA from Genome Canada. Eligible applicants will receive feedback on their applications including gaps and areas for improvement.

Researchers in Ontario intending to submit an application are strongly encouraged to contact OGI to discuss details of the competition such as the scope, the application process, and co-funding requirements.

Genomic Applications Partnership Program (GAPP)

Genome Canada launched a new funding program on June 3, 2013, seeking proposals which focus on the partnerships of Users and academia and to promote the application of genomics-derived solutions to address key sector challenges or opportunities facing Users – User pull.

With this program, Genome Canada aims to fund projects that have defined User partners and will have socioeconomic benefit to Canada. In particular, projects must have a clear partnership between the User partner and the academic researcher(s).

There will be a rolling application process (outlined below) that will consist of an EOI and a full application.

In order to better prepare the projects for this competition, Ontario Genomics will also complete a due diligence review of the EOIs prior to submission to Genome Canada. EOIs will be reviewed by a due diligence review panel (see members here). Applicants will be required to present their business case to the Review Panel at which time they will be screened for eligibility. At this same time, the Panel will also perform a due diligence review and question applicants. All applicants will receive feedback on their EOIs including gaps and areas for improvement. Ontario Genomics plans to use this feedback to assess the level and type of support required to help the team through the application process.

After receipt and acknowledgement of eligibility of the EOI by a portfolio manager at Genome Canada, eligible applicants will be invited to pitch their project to a Genome Canada panel consisting of the portfolio manager and external experts. Only successful applicants will be invited to submit a full application .

Applicants invited to submit a full application will undergo a second Ontario Genomics due diligence panel review. Constructive feedback will be provided at this time.